galaxy.hpc.ut.ee¶
Galaxy is an open source, web-based platform for data intensive biomedical research. It provides researchers with tools and computational resources through an easy-to-use interface.
Request an account¶
Regardless of your affiliation, you can request access to Galaxy by filling out the form here .
Galaxy supports two ways to log in: using your University of Tartu credentials or through ETAIS authentication.
ETAIS¶
ETAIS users can log into Galaxy, but without explicitly asking for access, you will be in view only mode. While you can upload data, any jobs you try to run will fail.
As a prerequisite to using Galaxy, you should have a working Rocket (UT HPC) resource. This resource will be linked to your Galaxy account after requesting access.
If you want to use Galaxy as an ETAIS user, then please send an email with your request to support@hpc.ut.ee . If you already have a Rocket resource, please include its name in your email.
University of Tartu¶
If you're already using the UT HPC cluster through the command line, you should be able to register automatically using your University of Tartu credentials.
For others, please use the form or send an email with your request to support@hpc.ut.ee . Make sure to include your UT account username.
Tools and datasets¶
Do keep in mind that UTHPC is in process of installing tools, sample datasets etc. You can send any requests regarding Galaxy choice of tools or reference datasets to support as well. You can view the tools available for installation into Galaxy at toolshed.g2.bx.psu.edu . Also, if you are planning to launch jobs on NGS datasets, please contact UTHPC first for support on tool profiling and resource allocation.